Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infants
Identifieur interne : 000924 ( Main/Exploration ); précédent : 000923; suivant : 000925Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infants
Auteurs : S. S. Al-Shehri [Australie, Arabie saoudite] ; E. L. Sweeney [Australie] ; D. M. Cowley [Australie] ; H. G. Liley [Australie] ; P. D. Ranasinghe [Australie] ; B. G. Charles [Australie] ; P. N. Shaw [Australie] ; D. Vagenas [Australie] ; J. A. Duley [Australie] ; C. L. Knox [Australie]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
Url:
DOI: 10.1038/srep38309
PubMed: 27922070
PubMed Central: 5138828
Affiliations:
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Al-Shehri</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Applied Medical Sciences, Taif University</institution>, Taif, 21974,<country>Saudi Arabia</country></nlm:aff><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sweeney, E L" sort="Sweeney, E L" uniqKey="Sweeney E" first="E. L." last="Sweeney">E. L. Sweeney</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cowley, D M" sort="Cowley, D M" uniqKey="Cowley D" first="D. M." last="Cowley">D. M. Cowley</name><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liley, H G" sort="Liley, H G" uniqKey="Liley H" first="H. G." last="Liley">H. G. Liley</name><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ranasinghe, P D" sort="Ranasinghe, P D" uniqKey="Ranasinghe P" first="P. D." last="Ranasinghe">P. D. Ranasinghe</name><affiliation wicri:level="1"><nlm:aff id="a5"><institution>Queensland University of Technology, Science and Engineering Faculty, School of Earth, Environmental and Biological Sciences</institution>, 4001,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Charles, B G" sort="Charles, B G" uniqKey="Charles B" first="B. G." last="Charles">B. G. Charles</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Shaw, P N" sort="Shaw, P N" uniqKey="Shaw P" first="P. N." last="Shaw">P. N. Shaw</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Vagenas, D" sort="Vagenas, D" uniqKey="Vagenas D" first="D." last="Vagenas">D. Vagenas</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Duley, J A" sort="Duley, J A" uniqKey="Duley J" first="J. A." last="Duley">J. A. Duley</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Knox, C L" sort="Knox, C L" uniqKey="Knox C" first="C. L." last="Knox">C. L. Knox</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27922070</idno><idno type="pmc">5138828</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5138828</idno><idno type="RBID">PMC:5138828</idno><idno type="doi">10.1038/srep38309</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000838</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000838</idno><idno type="wicri:Area/Pmc/Curation">000838</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000838</idno><idno type="wicri:Area/Pmc/Checkpoint">000779</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000779</idno><idno type="wicri:Area/Ncbi/Merge">006C63</idno><idno type="wicri:Area/Ncbi/Curation">006C63</idno><idno type="wicri:Area/Ncbi/Checkpoint">006C63</idno><idno type="wicri:Area/Main/Merge">000924</idno><idno type="wicri:Area/Main/Curation">000924</idno><idno type="wicri:Area/Main/Exploration">000924</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infants</title><author><name sortKey="Al Shehri, S S" sort="Al Shehri, S S" uniqKey="Al Shehri S" first="S. S." last="Al-Shehri">S. S. Al-Shehri</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>School of Applied Medical Sciences, Taif University</institution>, Taif, 21974,<country>Saudi Arabia</country></nlm:aff><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sweeney, E L" sort="Sweeney, E L" uniqKey="Sweeney E" first="E. L." last="Sweeney">E. L. Sweeney</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cowley, D M" sort="Cowley, D M" uniqKey="Cowley D" first="D. M." last="Cowley">D. M. Cowley</name><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Liley, H G" sort="Liley, H G" uniqKey="Liley H" first="H. G." last="Liley">H. G. Liley</name><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ranasinghe, P D" sort="Ranasinghe, P D" uniqKey="Ranasinghe P" first="P. D." last="Ranasinghe">P. D. Ranasinghe</name><affiliation wicri:level="1"><nlm:aff id="a5"><institution>Queensland University of Technology, Science and Engineering Faculty, School of Earth, Environmental and Biological Sciences</institution>, 4001,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Charles, B G" sort="Charles, B G" uniqKey="Charles B" first="B. G." last="Charles">B. G. Charles</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Shaw, P N" sort="Shaw, P N" uniqKey="Shaw P" first="P. N." last="Shaw">P. N. Shaw</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Vagenas, D" sort="Vagenas, D" uniqKey="Vagenas D" first="D." last="Vagenas">D. Vagenas</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Duley, J A" sort="Duley, J A" uniqKey="Duley J" first="J. A." last="Duley">J. A. Duley</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>School of Pharmacy, The University of Queensland</institution>, St Lucia, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a4"><institution>Mater Research Institute, The University of Queensland</institution>, Woolloongabba, 4102,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Knox, C L" sort="Knox, C L" uniqKey="Knox C" first="C. L." last="Knox">C. L. Knox</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>The Institute of Health and Biomedical Innovation, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology</institution>, Brisbane, 4059,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>In utero</italic> and upon delivery, neonates are exposed to a wide array of microorganisms from various sources, including maternal bacteria. Prior studies have proposed that the mode of feeding shapes the gut microbiota and, subsequently the child’s health. However, the effect of the mode of feeding and its influence on the development of the neonatal oral microbiota in early infancy has not yet been reported. The aim of this study was to compare the oral microbiota of healthy infants that were exclusively breast-fed or formula-fed using 16S-rRNA gene sequencing. We demonstrated that the oral bacterial communities were dominated by the phylum <italic>Firmicutes</italic>, in both groups. There was a higher prevalence of the phylum <italic>Bacteroidetes</italic> in the mouths of formula-fed infants than in breast-fed infants (<italic>p</italic> = 0.01), but in contrast <italic>Actinobacteria</italic> were more prevalent in breast-fed babies; <italic>Proteobacteria</italic> was more prevalent in saliva of breast-fed babies than in formula-fed neonates (<italic>p</italic> = 0.04). We also found evidence suggesting that the oral microbiota composition changed over time, particularly <italic>Streptococcus</italic> species, which had an increasing trend between 4–8 weeks in both groups. This study findings confirmed that the mode of feeding influences the development of oral microbiota, and this may have implications for long-term human health.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aagaard, K" uniqKey="Aagaard K">K. Aagaard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gueimonde, M" uniqKey="Gueimonde M">M. Gueimonde</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaishampayan, P A" uniqKey="Vaishampayan P">P. A. Vaishampayan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koenig, J E" uniqKey="Koenig J">J. E. 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